Difference between revisions of "Jmol Help"

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(Jmol measurements)
(Jmol measurements)
Line 210: Line 210:
  
 
== Jmol measurements ==
 
== Jmol measurements ==
<ul>
+
* Distance (2 atoms):
  <li>
+
     # double-click on the starting atom
    <p> Distance (2 atoms):</p>
+
    # to fix a distance measurement, double-click on second atom</p>
     <ol>
+
   
      <li>
+
* Angle (3 atoms):
        <p>double-click on the starting atom</p>
+
     # double-click on the starting atom
      </li>
+
    # click on the second atom (central atom in angle)
      <li>
+
    # to fix an angle measurement, double-click on third atom</p>
        <p>to fix a distance measurement, double-click on second atom</p>
+
 
      </li>
+
* Torsion angle or dihedral (4 atoms)
    </ol>
+
     # double-click on the starting atom
  </li>
+
    # click on the second atom
  <li>
+
    # click on the third atom</p>
    <p> Angle (3 atoms):</p>
+
    # to fix a dihedral angle measurement, double-click on fourth atom
     <ol>
+
* In all cases:
      <li>
+
     * move pointer over destination atom in order to see measurement results without leaving a permanent measurement  
        <p>double-click on the starting atom</p>
+
    * move outside the window in order to cancel the measurement
      </li>
+
    * make the same measurement again in order to delete the measurement
      <li>
 
        <p>click on the second atom (central atom in angle) </p>
 
      </li>
 
      <li>
 
        <p>to fix an angle measurement, double-click on third atom</p>
 
      </li>
 
    </ol>
 
  </li>
 
  <li>
 
    <p> Torsion angle or dihedral (4 atoms)</p>
 
     <ol>
 
      <li>
 
        <p>double-click on the starting atom</p>
 
      </li>
 
      <li>
 
        <p>click on the second atom</p>
 
      </li>
 
      <li>
 
        <p>click on the third atom</p>
 
      </li>
 
      <li>
 
        <p>to fix a dihedral angle measurement, double-click on fourth atom</p>
 
      </li>
 
    </ol>
 
  </li>
 
  <li>
 
    <p> In all cases:</p>
 
     <ul>
 
      <li>
 
        <p> move pointer over destination atom in order to see measurement results without leaving a permanent measurement</p>
 
      </li>
 
      <li>
 
        <p> move outside the window in order to cancel the measurement</p>
 
      </li>
 
      <li>
 
        <p> make the same measurement again in order to delete the measurement</p>
 
      </li>
 
    </ul>
 
  </li>
 
</ul>
 
  
 
==More==
 
==More==
 
For further information see: [[http://jmol.sourceforge.net http://jmol.sourceforge.net]]
 
For further information see: [[http://jmol.sourceforge.net http://jmol.sourceforge.net]]

Revision as of 15:01, 30 March 2014

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Jmol controls for 1-button (e.g. Macintosh), 2-button (e.g. Windows), 3-button (e.g. Linux), or wheel mice.

Action Main (left) button Middle button Secondary (right) button
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or Ctrl + click
  Click
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or mouse wheel
 
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Jmol measurements

  • Distance (2 atoms):
   # double-click on the starting atom
   # to fix a distance measurement, double-click on second atom</p>
    
  • Angle (3 atoms):
   # double-click on the starting atom
   # click on the second atom (central atom in angle)
   # to fix an angle measurement, double-click on third atom</p>
  • Torsion angle or dihedral (4 atoms)
   # double-click on the starting atom
   # click on the second atom
   # click on the third atom</p>
   # to fix a dihedral angle measurement, double-click on fourth atom
  • In all cases:
   * move pointer over destination atom in order to see measurement results without leaving a permanent measurement   
   * move outside the window in order to cancel the measurement
   * make the same measurement again in order to delete the measurement

More

For further information see: [http://jmol.sourceforge.net]