Jmol Help: Difference between revisions
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== Jmol default element colours == | |||
<p>Hover over any element to see more information (Atomic Number, Symbol, Element Name)</p> | <p>Hover over any element to see more information (Atomic Number, Symbol, Element Name)</p> | ||
<table> | <table> | ||
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== Jmol mouse control == | |||
<p>Jmol controls for 1-button (e.g. Macintosh), 2-button (e.g. Windows), 3-button (e.g. Linux), or wheel mice.</p> | <p>Jmol controls for 1-button (e.g. Macintosh), 2-button (e.g. Windows), 3-button (e.g. Linux), or wheel mice.</p> | ||
<table> | <table> | ||
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</tr> | </tr> | ||
</table> | </table> | ||
== Jmol measurements == | |||
<ul> | <ul> | ||
<li> | <li> | ||
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<p><b>For further information see: </b><a target="_blank" href="http://jmol.sourceforge.net">http://jmol.sourceforge.net</a></p> | <p><b>For further information see: </b><a target="_blank" href="http://jmol.sourceforge.net">http://jmol.sourceforge.net</a></p> | ||
Revision as of 14:06, 30 March 2014
Jmol default element colours
Hover over any element to see more information (Atomic Number, Symbol, Element Name)
| H | He | ||||||||||||||||
| Li | Be | B | C | N | O | F | Ne | ||||||||||
| Na | Mg | Al | Si | P | S | Cl | Ar | ||||||||||
| K | Ca | Sc | Ti | V | Cr | Mn | Fe | Co | Ni | Cu | Zn | Ga | Ge | As | Se | Br | Kr |
| Rb | Sr | Y | Zr | Nb | Mo | Tc | Ru | Rh | Pd | Ag | Cd | In | Sn | Sb | Te | I | Xe |
| Cs | Ba | * | Hf | Ta | W | Re | Os | Ir | Pt | Au | Hg | Tl | Pb | Bi | Po | At | Rn |
| Fr | Ra | ** | Rf | Db | Sg | Bh | Hs | Mt | |||||||||
| * | La | Ce | Pr | Nd | Pm | Sm | Eu | Gd | Tb | Dy | Ho | Er | Tm | Yb | Lu | ||
| ** | Ac | Th | Pa | U | Np | Pu | Am | Cm | Bk | Cf | Es | Fm | Md | No | Lr | ||
Jmol mouse control
Jmol controls for 1-button (e.g. Macintosh), 2-button (e.g. Windows), 3-button (e.g. Linux), or wheel mice.
| Action | Main (left) button | Middle button | Secondary (right) button |
|---|---|---|---|
| Jmol menu | Click on Jmol logo or Ctrl + click |
Click | |
| Rotate X,Y | Click & drag | ||
| Translate X,Y | Shift + double-click & drag | Double-click & drag | Ctrl + click & drag |
| Rotate Z | Shift + click & drag horizontally | Click & drag horizontally | Shift + click & drag horizontally |
| Zoom | Shift + click & drag vertically | Click & drag vertically or mouse wheel |
|
| Reset & centre | Shift + double-click (away from molecule) | Double-click (away from molecule) |
Jmol measurements
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Distance (2 atoms):
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double-click on the starting atom
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to fix a distance measurement, double-click on second atom
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Angle (3 atoms):
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double-click on the starting atom
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click on the second atom (central atom in angle)
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to fix an angle measurement, double-click on third atom
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Torsion angle or dihedral (4 atoms)
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double-click on the starting atom
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click on the second atom
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click on the third atom
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to fix a dihedral angle measurement, double-click on fourth atom
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In all cases:
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move pointer over destination atom in order to see measurement results without leaving a permanent measurement
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move outside the window in order to cancel the measurement
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make the same measurement again in order to delete the measurement
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For further information see: <a target="_blank" href="http://jmol.sourceforge.net">http://jmol.sourceforge.net</a>
